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The cistrome db toolkit database

網頁2024年4月17日 · Toolkit旨在帮助用户轻松地从Cistrome DB的大量数据集中提取有效信息:1)输入基因名称, 查看有哪些转录因子可能调控该基因;2)输入基因组区域,查看有哪些转录因子可能结合在该区域;3)输入peak结果,查看哪些转录因子的结果与你的输入结果有明显的overlap,可以用于转录因子的colocation分析。 批量数据下载 在遵循Cistrome … 網頁2024年11月27日 · cistrome下载bigwig数据的骚操作 日常瞎掰 CistromeDB做为表观方面的数据库分析收藏了很多公开发表的表观数据,包括人和小鼠的转录因子、组蛋白。这里就不再详细介绍数据库的页面了,如果想知道可以打开数据库自己的Documentation页面观看。 其实这个主网站还有很多其他功能,这里也不再赘述,想 ...

Cistrome DB - Database Commons - CNCB

網頁ABSTRACT The Cistrome Data Browser (DB) is a resource of hu- man and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin … 網頁2024年11月17日 · The best thing about using Excel as a database is that it's an easily accessible tool that can be used by almost everyone on your team. Another Microsoft tool that can be used to create databases is Access. Both Access and Excel are part of the Microsoft Office 365 suite of products, meaning that they’re easily accessible to many … fowl manor ireland https://mcneilllehman.com

Computational Approaches to Modeling Transcription Factor …

網頁The Cistrome Data Browser (DB) (www.cistrome.org/db) containsa comprehensive collection of publicly available ChIP-seq, DNase-seq, and ATAC-seq profiles in human and mouse, processed using consistent workflows. Cistrome DB functions help investigators find relevant profiles and answer common questions on transcriptional or epigenetic … 網頁2011年8月22日 · In addition to the standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Cistrome is available at http://cistrome.org/ap/. Rationale 網頁In addition to cis-regulatory data, the Cistrome DB includes data analysis tools, such as Lisa, the Cistrome DB Toolkit and Cistrome-GO, which can help researchers find … fowlmere eschools login

Dana Farber Data Science Cancer Research

Category:MotifGenie: a Python application for searching transcription factor …

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The cistrome db toolkit database

Computational Approaches to Modeling Transcription Factor …

http://dbtoolkit.cistrome.org/document 網頁2024年9月21日 · Cistrome DB Toolkit database 6 (Zheng et al., 2024) is a website tool that allows users to query transcription factors (TFs) that might regulate genes. We used the Cistrome DB Toolkit to predict which TFs are most …

The cistrome db toolkit database

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網頁图片来源:Cistrome DB 做肿瘤相关研究的同学都清楚,肿瘤细胞中组蛋白的甲基化、乙酰化等表观遗传修饰可能会发生一定改变。 而我想知道的是,在我研究的肝癌细胞HepG2中,乙酰化的组蛋白H3是否参与了我感兴趣的某基因的转录调控。因为不确定细胞系、组蛋白的拼写规则及表观遗传修饰的表示 ... 網頁2024年11月8日 · ProChIPdb, an information-rich, interactive web database, that collects public ChIP-seq/-exo data across several prokaryotes and presents them in dashboards that include curated binding sites, nucleotide-resolution genome viewers, and summary plots such as motif enrichment sequence logos. 3 PDF View 1 excerpt, cites methods

網頁Cistrome DB总共收录了30451人和26013小鼠的转录因子、组蛋白修饰和染色质可及性样本,可以说是目前最全面的研究ChIP-seq和DNase-seq的数据库。 我们可在Cistrome DB … 網頁The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin profiling assays, which map the genome-wide...

網頁2024年6月3日 · The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin … 網頁Second, the Cistrome DB Toolkit facilitates searches for factor binding, histone modifications, and chromatin accessibility in any given genomic interval shorter than 2Mb. Third, the Toolkit can determine the most similar ChIP-seq, DNase-seq, and ATAC-seq samples in terms of genomic interval overlaps with user-provided genomic interval sets.

網頁2024年5月4日 · The Cistrome Data Browser (DB) at the website (cistrome.org/db) provides about 56,000 published human and mouse ChIP-seq, DNase-seq, and ATAC-seq …

網頁2024年5月17日 · The Cistrome Database (Liu et al., 2011), along with the associated search and analysis tools, is an invaluable collection of ChIP-Seq data. It allows users to search for ChIP-Seq data generated with the use of various biological resources for a specific transcription factor (TF). fowlmembers hotmail.com網頁2024年11月20日 · The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin … fowl manure網頁2024年1月8日 · The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin … black studded cowboy boots